Index

A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Z

---

A

a2() (pyviblib.calc.spectra.RamanROATensors method) AbstractCalcMixtureWindow (class in pyviblib.gui.windows) AbstractFigureWindow (class in pyviblib.gui.windows) AbstractFileParser (class in pyviblib.io.parsers) AbstractFileWriter (class in pyviblib.io.writers) AbstractMultipleExpWindow (class in pyviblib.gui.windows) AbstractSpectraSettingsDialog (class in pyviblib.gui.dialogs) acp() (pyviblib.calc.spectra.IRVCDTensors method) (pyviblib.calc.spectra.RamanROATensors method) activate() (pyviblib.gui.main.Main method) add_button() (pyviblib.gui.widgets.ButtonToolbar method) add_line() (pyviblib.gui.widgets.PropertiesWidget method) add_molecule() (pyviblib.gui.main.Main method) add_separator() (pyviblib.gui.widgets.ButtonToolbar method) (pyviblib.gui.widgets.PropertiesWidget method)

aG() (pyviblib.calc.spectra.RamanROATensors method) ambient_color (pyviblib.util.pse.Material attribute) AnalyzeClusterWindow (class in pyviblib.gui.windows) angle() (in module pyviblib.calc.common) (pyviblib.molecule.Molecule method) angle_vectors() (in module pyviblib.calc.common) AnimationSettingsDialog (class in pyviblib.gui.dialogs) ApplicationSettingsDialog (class in pyviblib.gui.dialogs) apply_corr() (in module pyviblib.calc.common) apply_settings() (pyviblib.gui.windows.MoleculeWindow method) ArrangeExpSpectraWindow (class in pyviblib.gui.windows) Atom (class in pyviblib.molecule) atomno (pyviblib.util.pse.Element attribute) AxesSettingsWidget (class in pyviblib.gui.widgets)

B

b2() (pyviblib.calc.spectra.RamanROATensors method) b2A() (pyviblib.calc.spectra.RamanROATensors method) b2G() (pyviblib.calc.spectra.RamanROATensors method) BaseDialog (class in pyviblib.gui.dialogs) BaseFigure (class in pyviblib.gui.figures) BaseSpectrumFigure (class in pyviblib.gui.figures) BaseWidget (class in pyviblib.gui.widgets) BaseWindow (class in pyviblib.gui.windows)

bind_mouse_wheel() (in module pyviblib.gui.widgets) boltzmann_distr() (in module pyviblib.calc.common) boltzmann_factor() (in module pyviblib.calc.common) BoltzmannMixtureSpectraWindow (class in pyviblib.gui.windows) Bond (class in pyviblib.molecule) ButtonToolbar (class in pyviblib.gui.widgets)

C

calc_all_devs() (in module pyviblib.calc.vibrations) calc_dcm() (in module pyviblib.calc.common) calc_spectra_nmol() (in module pyviblib.calc.spectra) ChooseColorWidget (class in pyviblib.gui.widgets) cleanup() (pyviblib.gui.widgets.MoleculeRenderWidget method) clone() (pyviblib.gui.windows.AnalyzeClusterWindow method) (pyviblib.gui.windows.ArrangeExpSpectraWindow method) (pyviblib.gui.windows.BaseWindow method) (pyviblib.gui.windows.BoltzmannMixtureSpectraWindow method) (pyviblib.gui.windows.CompareMoleculesWindow method) (pyviblib.gui.windows.CorrelateCalcCalcSpectraWindow method) (pyviblib.gui.windows.CorrelateCalcExpSpectraWindow method) (pyviblib.gui.windows.CorrelateExpExpSpectraWindow method) (pyviblib.gui.windows.CorrelateVibrationsWindow method) (pyviblib.gui.windows.CorrelationResultsWindow method) (pyviblib.gui.windows.CumulatedNormalizedVibSumsWindow method) (pyviblib.gui.windows.DCMSumsWindow method) (pyviblib.gui.windows.ExpROACumulatedNormalizedSumsWindow method) (pyviblib.gui.windows.GroupsInfoWindow method) (pyviblib.gui.windows.GroupsLocalizationWindow method) (pyviblib.gui.windows.IRExpWindow method) (pyviblib.gui.windows.IRMultipleExpWindow method) (pyviblib.gui.windows.IRVCDCalcMixtureWindow method) (pyviblib.gui.windows.IRVCDCalcWindow method) (pyviblib.gui.windows.IRVCDGenerationWindow method) (pyviblib.gui.windows.ImportIRExpSpectraWindow method) (pyviblib.gui.windows.ImportRamanROAExpSpectraWindow method) (pyviblib.gui.windows.MoleculeWindow method) (pyviblib.gui.windows.RamanROADegcircCalcMixtureWindow method) (pyviblib.gui.windows.RamanROADegcircCalcWindow method) (pyviblib.gui.windows.RamanROADegcircExpWindow method) (pyviblib.gui.windows.RamanROADegcircMultipleExpWindow method) (pyviblib.gui.windows.RamanROAGenerationWindow method) (pyviblib.gui.windows.SingleVibrationWindow method) (pyviblib.gui.windows.VOASimilarityCurvesWindow method) (pyviblib.gui.windows.VibLocalizationsWindow method) (pyviblib.gui.windows.VibrationPairWindow method)

Cluster (class in pyviblib.molecule) color_complementary() (in module pyviblib.util.misc) color_html_to_RGB() (in module pyviblib.util.misc) color_RGB_to_html() (in module pyviblib.util.misc) Command (class in pyviblib.util.misc) CompareIRVCDACPWindow (class in pyviblib.gui.windows) CompareMoleculesWindow (class in pyviblib.gui.windows) CompareRamanROAACPWindow (class in pyviblib.gui.windows) contract() (in module pyviblib.calc.common) contract_A_tensor() (in module pyviblib.calc.spectra) contract_t() (in module pyviblib.calc.common) conv_A4_AMU() (in module pyviblib.calc.spectra) conv_cross_sections() (in module pyviblib.calc.spectra) conv_invariant() (in module pyviblib.calc.spectra) conv_units_raman_roa() (in module pyviblib.calc.spectra) correlate_vibrations() (in module pyviblib.calc.vibrations) correlate_vibrations_all() (in module pyviblib.calc.vibrations) CorrelateCalcCalcSpectraWindow (class in pyviblib.gui.windows) CorrelateCalcExpSpectraWindow (class in pyviblib.gui.windows) CorrelateExpExpSpectraWindow (class in pyviblib.gui.windows) CorrelateVibrationsWindow (class in pyviblib.gui.windows) CorrelationResultsNoteBook (class in pyviblib.gui.widgets) CorrelationResultsTable (class in pyviblib.gui.widgets) CorrelationResultsWindow (class in pyviblib.gui.windows) cosine() (in module pyviblib.calc.common) create_animation_frames() (pyviblib.gui.widgets.MoleculeRenderWidget method) create_cylinder() (in module pyviblib.gui.rendering) create_dyad() (in module pyviblib.calc.vibrations) create_parser() (pyviblib.io.parsers.ParserFactory static method) create_sphere() (in module pyviblib.gui.rendering) crossproduct() (in module pyviblib.calc.common) CumulatedNormalizedVibSumsDialog (class in pyviblib.gui.dialogs) CumulatedNormalizedVibSumsFigure (class in pyviblib.gui.figures) CumulatedNormalizedVibSumsWindow (class in pyviblib.gui.windows)

D

D() (pyviblib.calc.spectra.IRVCDTensors method) DaltonOutputParser (class in pyviblib.io.parsers) DataInconsistencyError dcm_p() (in module pyviblib.calc.vibrations) DCMSumsFigure (class in pyviblib.gui.figures) DCMSumsSettingsDialog (class in pyviblib.gui.dialogs) DCMSumsWindow (class in pyviblib.gui.windows) decompose() (in module pyviblib.calc.common) decompose_t() (in module pyviblib.calc.common) decrease_scale_factor() (pyviblib.gui.widgets.VibrationalToolbar method) (pyviblib.gui.widgets.VibrationalToolbarLight method)

DefineGroupsDialog (class in pyviblib.gui.dialogs) degree_localization() (in module pyviblib.calc.vibrations) depick_atoms() (pyviblib.gui.widgets.MoleculeRenderWidget method) destroyme() (pyviblib.gui.windows.BaseWindow method) diffuse_color (pyviblib.util.pse.Material attribute) dihedral() (in module pyviblib.calc.common) (pyviblib.molecule.Molecule method) distance() (in module pyviblib.calc.common) (pyviblib.molecule.Molecule method)

E

Element (class in pyviblib.util.pse) ElementIsotopeDialog (class in pyviblib.gui.dialogs) enable_controls() (pyviblib.gui.widgets.VibNavigationFrame method) end_pairs_picking() (pyviblib.gui.widgets.MoleculeRenderWidget method)

ExpRamanROAData (class in pyviblib.calc.spectra) ExpROACumulatedNormalizedSumsFigure (class in pyviblib.gui.figures) ExpROACumulatedNormalizedSumsWindow (class in pyviblib.gui.windows)

F

f_Qp_i() (in module pyviblib.calc.spectra) FCHKFileParser (class in pyviblib.io.parsers) FCHKFileWriter (class in pyviblib.io.writers) FCMINTFileParser (class in pyviblib.io.parsers) fget_attr() (pyviblib.util.misc.Command static method) FileInfoDialog (class in pyviblib.gui.dialogs) find_element_by_atomno() (in module pyviblib.util.pse) find_element_by_isotope() (in module pyviblib.util.pse) find_element_by_standard_weight() (in module pyviblib.util.pse) find_element_by_symbol() (in module pyviblib.util.pse)

find_isotopes() (in module pyviblib.util.pse) fit() (in module pyviblib.calc.qtrfit) fit_raman_roa() (in module pyviblib.calc.spectra) fit_spectra() (pyviblib.calc.spectra.IRVCDTensors method) (pyviblib.calc.spectra.RamanROATensors method) fitgauss_params() (in module pyviblib.calc.common) FittedSpectraFileParser (class in pyviblib.io.parsers) fset_attr() (pyviblib.util.misc.Command static method)

G

GaussianInputFileWriter (class in pyviblib.io.writers) gcp() (pyviblib.calc.spectra.RamanROATensors method) gen_group_labels() (in module pyviblib.util.misc) gen_molecule_name() (in module pyviblib.util.misc) generate_tr_rot() (in module pyviblib.calc.vibrations) GeometryMeasureToolbar (class in pyviblib.gui.widgets) get_description() (pyviblib.io.parsers.AbstractFileParser static method) (pyviblib.io.parsers.DaltonOutputParser static method) (pyviblib.io.parsers.FCHKFileParser static method) (pyviblib.io.parsers.HESFileParser static method) (pyviblib.io.parsers.MOLDENFileParser static method) (pyviblib.io.parsers.PyVib2MolFileParser static method) (pyviblib.io.parsers.VOAVIEWFileParser static method) (pyviblib.io.parsers.XMolXYZFileParser static method) get_font_molecules() (in module pyviblib.gui.resources) get_molecules() (pyviblib.gui.windows.AbstractCalcMixtureWindow method) (pyviblib.gui.windows.AbstractFigureWindow method) (pyviblib.gui.windows.GroupsLocalizationWindow method) (pyviblib.gui.windows.MoleculeWindow method) (pyviblib.gui.windows.RamanROAGenerationWindow method) (pyviblib.gui.windows.VOASimilarityCurvesWindow method) (pyviblib.gui.windows.WorkspaceWindow method) get_node() (pyviblib.gui.widgets.MoleculeRenderWidget method) get_pickle_dict() (pyviblib.gui.windows.AbstractCalcMixtureWindow method) (pyviblib.gui.windows.AbstractMultipleExpWindow method) (pyviblib.gui.windows.CumulatedNormalizedVibSumsWindow method) (pyviblib.gui.windows.DCMSumsWindow method) (pyviblib.gui.windows.ExpROACumulatedNormalizedSumsWindow method) (pyviblib.gui.windows.GroupsLocalizationWindow method) (pyviblib.gui.windows.IRExpWindow method) (pyviblib.gui.windows.IRMultipleExpWindow method) (pyviblib.gui.windows.IRVCDCalcMixtureWindow method) (pyviblib.gui.windows.IRVCDCalcWindow method) (pyviblib.gui.windows.IRVCDGenerationWindow method) (pyviblib.gui.windows.MoleculeWindow method) (pyviblib.gui.windows.RamanROADegcircCalcWindow method) (pyviblib.gui.windows.RamanROADegcircExpWindow method) (pyviblib.gui.windows.RamanROADegcircMultipleExpWindow method) (pyviblib.gui.windows.RamanROAGenerationWindow method) (pyviblib.gui.windows.VOASimilarityCurvesWindow method) (pyviblib.gui.windows.VibLocalizationsWindow method) (pyviblib.gui.windows.WorkspaceWindow method)

get_rect_spectrum() (pyviblib.gui.figures.MultipleSpectraFigure static method) get_representation_as_index() (pyviblib.gui.figures.BaseSpectrumFigure static method) get_rootdir() (in module pyviblib) get_scattering_as_index() (pyviblib.gui.figures.RamanROADegcircCalcFigure static method) get_spectra_axes() (pyviblib.gui.figures.BaseSpectrumFigure method) get_tex_spectrum_label() (pyviblib.gui.figures.IRExpFigure static method) (pyviblib.gui.figures.IRVCDCalcFigure static method) (pyviblib.gui.figures.RamanROADegcircCalcFigure static method) (pyviblib.gui.figures.RamanROADegcircExpFigure static method) get_tex_spectrum_units() (pyviblib.gui.figures.IRVCDCalcFigure static method) (pyviblib.gui.figures.RamanROADegcircCalcFigure static method) (pyviblib.gui.figures.RamanROADegcircExpFigure static method) get_type_id() (pyviblib.gui.windows.CompareIRVCDACPWindow static method) (pyviblib.gui.windows.CompareRamanROAACPWindow static method) (pyviblib.gui.windows.CumulatedNormalizedVibSumsWindow static method) (pyviblib.gui.windows.DCMSumsWindow static method) (pyviblib.gui.windows.ExpROACumulatedNormalizedSumsWindow static method) (pyviblib.gui.windows.GroupsLocalizationWindow static method) (pyviblib.gui.windows.IRExpWindow static method) (pyviblib.gui.windows.IRMultipleExpWindow static method) (pyviblib.gui.windows.IRVCDCalcMixtureWindow static method) (pyviblib.gui.windows.IRVCDCalcWindow static method) (pyviblib.gui.windows.IRVCDGenerationWindow static method) (pyviblib.gui.windows.MoleculeWindow static method) (pyviblib.gui.windows.RamanROADegcircCalcMixtureWindow static method) (pyviblib.gui.windows.RamanROADegcircCalcWindow static method) (pyviblib.gui.windows.RamanROADegcircExpWindow static method) (pyviblib.gui.windows.RamanROADegcircMultipleExpWindow static method) (pyviblib.gui.windows.RamanROAGenerationWindow static method) (pyviblib.gui.windows.VOASimilarityCurvesWindow static method) (pyviblib.gui.windows.VibLocalizationsWindow static method) (pyviblib.gui.windows.WorkspaceWindow static method) getimage() (in module pyviblib.gui.images) go_backward() (pyviblib.gui.widgets.VibrationalToolbar method) go_first() (pyviblib.gui.widgets.VibrationalToolbar method) go_forward() (pyviblib.gui.widgets.VibrationalToolbar method) go_last() (pyviblib.gui.widgets.VibrationalToolbar method) GroupsInfoWindow (class in pyviblib.gui.windows) GroupsLocalizationWindow (class in pyviblib.gui.windows)

H

HESFileParser (class in pyviblib.io.parsers) HESFileWriter (class in pyviblib.io.writers) hessian_dev() (in module pyviblib.calc.vibrations)

hessian_magnitude() (in module pyviblib.calc.vibrations) highlight_picked_atoms() (pyviblib.gui.widgets.MoleculeRenderWidget method)

I

ij_to_vibno() (pyviblib.gui.widgets.CorrelationResultsTable method) import_processing() (in module pyviblib.util.misc) ImportIRExpSpectraWindow (class in pyviblib.gui.windows) ImportRamanROAExpSpectraWindow (class in pyviblib.gui.windows) increase_scale_factor() (pyviblib.gui.widgets.VibrationalToolbar method) (pyviblib.gui.widgets.VibrationalToolbarLight method) inertia_tensor() (in module pyviblib.calc.common) InfoWidget (class in pyviblib.gui.widgets) InitializerError integrated_coeffs() (pyviblib.calc.spectra.IRVCDTensors method) intensities() (pyviblib.calc.spectra.RamanROATensors static method) inv_coeffs_raman_roa() (in module pyviblib.calc.spectra) InvalidArgumentError IOOperationError ir_matrix() (pyviblib.calc.spectra.IRVCDTensors method) IRExpFigure (class in pyviblib.gui.figures)

IRExpSettingsDialog (class in pyviblib.gui.dialogs) IRExpWindow (class in pyviblib.gui.windows) IRMultipleExpWindow (class in pyviblib.gui.windows) IRVCDCalcFigure (class in pyviblib.gui.figures) IRVCDCalcMixtureFigure (class in pyviblib.gui.figures) IRVCDCalcMixtureWindow (class in pyviblib.gui.windows) IRVCDCalcSettingsDialog (class in pyviblib.gui.dialogs) IRVCDCalcWindow (class in pyviblib.gui.windows) IRVCDGenerationWindow (class in pyviblib.gui.windows) IRVCDTensors (class in pyviblib.calc.spectra) is_command_on_path() (in module pyviblib.util.misc) is_even_permutation() (in module pyviblib.calc.common) isotopes (pyviblib.util.pse.Element attribute) IsotopesDialog (class in pyviblib.gui.dialogs) isotopno (pyviblib.util.pse.Element attribute)

J

J_all() (pyviblib.calc.spectra.RamanROATensors method) J_all_AB() (pyviblib.calc.spectra.RamanROATensors method) J_all_dec() (pyviblib.calc.spectra.RamanROATensors method)

J_all_mol() (pyviblib.calc.spectra.RamanROATensors static method) J_rot() (pyviblib.calc.spectra.RamanROATensors method)

K

Kp() (in module pyviblib.calc.spectra) kronecker() (in module pyviblib.calc.common)

L

length() (pyviblib.molecule.Bond method) levi_civita() (in module pyviblib.calc.common)

M

Main (class in pyviblib.gui.main) make_acp() (in module pyviblib.calc.spectra) make_enantiomer() (pyviblib.calc.spectra.IRVCDTensors method) (pyviblib.calc.spectra.RamanROATensors method) (pyviblib.molecule.Molecule method) make_gcm() (in module pyviblib.calc.common) make_gcp() (in module pyviblib.calc.common) mark_rect_ij() (pyviblib.gui.widgets.TwoDCircles method) mass (pyviblib.util.pse.Element attribute) mass_center() (in module pyviblib.calc.common) (pyviblib.molecule.Molecule method) Material (class in pyviblib.util.pse) material (pyviblib.util.pse.Element attribute) maximize() (pyviblib.gui.windows.BaseWindow method) memoize_deterministic() (in module pyviblib.util.misc) merge() (pyviblib.util.misc.SmartDict method) MixtureIRVCDCalcDialog (class in pyviblib.gui.dialogs) MixtureRamanROADegcircCalcDialog (class in pyviblib.gui.dialogs)

MixtureSpectraCalcSettingsDialog (class in pyviblib.gui.dialogs) MOLDENFileParser (class in pyviblib.io.parsers) MOLDENFileWriter (class in pyviblib.io.writers) Molecule (class in pyviblib.molecule) MoleculeRenderWidget (class in pyviblib.gui.widgets) MoleculeThumbnailWidget (class in pyviblib.gui.widgets) MoleculeWindow (class in pyviblib.gui.windows) MoleculeWindowSettingsDialog (class in pyviblib.gui.dialogs) mouse_wheel() (in module pyviblib.gui.widgets) MultipleCalcSpectraSettingsDialog (class in pyviblib.gui.dialogs) MultipleExpSpectraSettingsDialog (class in pyviblib.gui.dialogs) MultipleIRExpDialog (class in pyviblib.gui.dialogs) MultipleIRVCDCalcDialog (class in pyviblib.gui.dialogs) MultipleRamanROADegcircCalcDialog (class in pyviblib.gui.dialogs) MultipleRamanROADegcircExpDialog (class in pyviblib.gui.dialogs) MultipleSpectraFigure (class in pyviblib.gui.figures)

N

NavigationToolbar (class in pyviblib.gui.widgets) norm() (in module pyviblib.calc.common) norm_sum_rot() (pyviblib.calc.spectra.IRVCDTensors method) (pyviblib.calc.spectra.RamanROATensors method) norm_sum_vib() (pyviblib.calc.spectra.IRVCDTensors method) (pyviblib.calc.spectra.RamanROATensors method)

normalize_set() (in module pyviblib.calc.common) NumericDataFileParser (class in pyviblib.io.parsers)

O

omega_p() (in module pyviblib.calc.vibrations) orient_actor() (in module pyviblib.gui.rendering)

orthogonalize_set() (in module pyviblib.calc.common)

P

pack_pickle() (pyviblib.molecule.Molecule static method) ParseError ParserFactory (class in pyviblib.io.parsers) PatchedPmwOptionMenu (class in pyviblib.gui.widgets) PercentageFigure (class in pyviblib.gui.figures) pick_atoms() (pyviblib.gui.widgets.MoleculeRenderWidget method) plot_localizations() (pyviblib.gui.figures.VibLocalizationsFigure method) plot_spectra() (pyviblib.gui.figures.IRExpFigure method) (pyviblib.gui.figures.IRVCDCalcFigure method) (pyviblib.gui.figures.IRVCDCalcMixtureFigure method) (pyviblib.gui.figures.MultipleSpectraFigure method) (pyviblib.gui.figures.RamanROADegcircCalcFigure method) (pyviblib.gui.figures.RamanROADegcircCalcMixtureFigure method) (pyviblib.gui.figures.RamanROADegcircExpFigure method) (pyviblib.gui.figures.VOASimilarityCurvesFigure method) plot_sums() (pyviblib.gui.figures.CumulatedNormalizedVibSumsFigure method) (pyviblib.gui.figures.DCMSumsFigure method) (pyviblib.gui.figures.ExpROACumulatedNormalizedSumsFigure method) pmw_widget() (in module pyviblib.gui.widgets) ppm2gif() (in module pyviblib.util.misc) process_raw_data() (pyviblib.gui.figures.IRExpFigure static method) (pyviblib.gui.figures.RamanROADegcircExpFigure static method) PropertiesContainer (class in pyviblib.util.misc) PropertiesWidget (class in pyviblib.gui.widgets) ps2pdf() (in module pyviblib.util.misc) PyVib2MolFileParser (class in pyviblib.io.parsers) PyVib2MolFileWriter (class in pyviblib.io.writers)

pyviblib (module) pyviblib.calc (module) pyviblib.calc.common (module) pyviblib.calc.qtrfit (module) pyviblib.calc.spectra (module) pyviblib.calc.vibrations (module) pyviblib.gui (module) pyviblib.gui.dialogs (module) pyviblib.gui.figures (module) pyviblib.gui.images (module) pyviblib.gui.main (module) pyviblib.gui.rendering (module) pyviblib.gui.resources (module) pyviblib.gui.widgets (module) pyviblib.gui.windows (module) pyviblib.io (module) pyviblib.io.parsers (module) pyviblib.io.workspace (module) pyviblib.io.writers (module) pyviblib.molecule (module) pyviblib.util (module) pyviblib.util.constants (module) pyviblib.util.exceptions (module) pyviblib.util.misc (module) pyviblib.util.pse (module)

Q

QtrfitSummaryDialog (class in pyviblib.gui.dialogs) quat2matrix() (in module pyviblib.calc.common)

R

R() (pyviblib.calc.spectra.IRVCDTensors method) r_coval (pyviblib.util.pse.Element attribute) r_vdw (pyviblib.util.pse.Element attribute) RamanROADegcircCalcFigure (class in pyviblib.gui.figures) RamanROADegcircCalcMixtureFigure (class in pyviblib.gui.figures) RamanROADegcircCalcMixtureWindow (class in pyviblib.gui.windows) RamanROADegcircCalcSettingsDialog (class in pyviblib.gui.dialogs) RamanROADegcircCalcWindow (class in pyviblib.gui.windows) RamanROADegcircExpFigure (class in pyviblib.gui.figures) RamanROADegcircExpSettingsDialog (class in pyviblib.gui.dialogs) RamanROADegcircExpWindow (class in pyviblib.gui.windows) RamanROADegcircMultipleExpWindow (class in pyviblib.gui.windows) RamanROAExpSpectraFileParser (class in pyviblib.io.parsers) RamanROAExpSpectraFileWriter (class in pyviblib.io.writers) RamanROAGenerationWindow (class in pyviblib.gui.windows) RamanROATensors (class in pyviblib.calc.spectra) random_color() (in module pyviblib.util.misc) readconfig_option() (in module pyviblib.util.misc)

register_window() (pyviblib.gui.main.Main method) remove_contaminations() (in module pyviblib.calc.vibrations) remove_indices_from_list() (in module pyviblib.util.misc) remove_thumbnail() (pyviblib.gui.main.Main method) remove_triangles() (pyviblib.gui.widgets.MoleculeRenderWidget method) render_gcp() (pyviblib.gui.widgets.MoleculeRenderWidget method) render_molecule() (pyviblib.gui.widgets.MoleculeRenderWidget method) render_scalars() (pyviblib.gui.widgets.MoleculeRenderWidget method) render_triangle() (pyviblib.gui.widgets.MoleculeRenderWidget method) render_vibration() (pyviblib.gui.widgets.MoleculeRenderWidget method) restore_last_zoom() (pyviblib.gui.figures.BaseSpectrumFigure method) restore_workspace() (in module pyviblib.io.workspace) rests() (in module pyviblib.util.misc) rotate() (pyviblib.calc.spectra.IRVCDTensors method) (pyviblib.gui.widgets.MoleculeRenderWidget method) rotate_t() (in module pyviblib.calc.common) rotmatrix_axis() (in module pyviblib.calc.common)

S

save() (pyviblib.gui.figures.BaseFigure method) (pyviblib.gui.figures.BaseSpectrumFigure method) save_animation() (pyviblib.gui.windows.MoleculeWindow method) save_camera_state() (pyviblib.gui.widgets.NavigationToolbar method) save_matrix() (in module pyviblib.util.misc) save_vibrations() (pyviblib.gui.windows.MoleculeWindow method) save_workspace() (in module pyviblib.io.workspace) SaveVibrationsDialog (class in pyviblib.gui.dialogs) savitzky_golay() (in module pyviblib.calc.common) selectpage() (pyviblib.gui.dialogs.AbstractSpectraSettingsDialog method) set_infotext() (pyviblib.gui.windows.SingleVibrationWindow method) set_new_molecule_id() (pyviblib.molecule.Molecule method) set_V_tensors() (pyviblib.calc.spectra.RamanROATensors method) setitems() (pyviblib.gui.widgets.PatchedPmwOptionMenu method) show_A4() (pyviblib.gui.widgets.CorrelationResultsNoteBook method) show_exception() (in module pyviblib.gui.widgets) signum() (in module pyviblib.calc.common) SingleMoleculeSpectraFigure (class in pyviblib.gui.figures)

SingleVibrationWindow (class in pyviblib.gui.windows) SmartDict (class in pyviblib.util.misc) snapshot() (pyviblib.gui.widgets.MoleculeRenderWidget method) SnapshotDialog (class in pyviblib.gui.dialogs) spatproduct() (in module pyviblib.calc.common) SpectraMixtureFileParser (class in pyviblib.io.parsers) SpectraMixtureFileWriter (class in pyviblib.io.writers) specular_color (pyviblib.util.pse.Material attribute) SplashScreen (class in pyviblib.gui.widgets) standard_weight (pyviblib.util.pse.Element attribute) start_pairs_picking() (pyviblib.gui.widgets.MoleculeRenderWidget method) stick_raman_roa() (in module pyviblib.calc.spectra) stick_spectra() (pyviblib.calc.spectra.RamanROATensors method) str_to_float() (in module pyviblib.util.misc) symbol (pyviblib.util.pse.Element attribute) synchronize_camera_state() (pyviblib.gui.widgets.MoleculeRenderWidget method)

T

transform() (pyviblib.calc.spectra.RamanROATensors method) (pyviblib.molecule.Molecule method) TwoDCircles (class in pyviblib.gui.widgets)

TwoDCirclesSettingsDialog (class in pyviblib.gui.dialogs)

U

unique() (in module pyviblib.util.misc) unregister_window() (pyviblib.gui.main.Main method) update() (pyviblib.gui.widgets.TwoDCircles method) update_() (pyviblib.util.misc.SmartDict method) update_camera() (pyviblib.gui.widgets.NavigationToolbar method) update_contents() (pyviblib.gui.widgets.CorrelationResultsNoteBook method) update_controls() (pyviblib.gui.dialogs.AbstractSpectraSettingsDialog method) (pyviblib.gui.dialogs.ApplicationSettingsDialog method) (pyviblib.gui.dialogs.CumulatedNormalizedVibSumsDialog method) (pyviblib.gui.dialogs.DCMSumsSettingsDialog method) (pyviblib.gui.dialogs.IRExpSettingsDialog method) (pyviblib.gui.dialogs.MixtureSpectraCalcSettingsDialog method) (pyviblib.gui.dialogs.MoleculeWindowSettingsDialog method) (pyviblib.gui.dialogs.MultipleCalcSpectraSettingsDialog method) (pyviblib.gui.dialogs.MultipleExpSpectraSettingsDialog method) (pyviblib.gui.dialogs.RamanROADegcircExpSettingsDialog method) (pyviblib.gui.dialogs.TwoDCirclesSettingsDialog method) (pyviblib.gui.dialogs.VOASimilarityCurvesSettingsDialog method) (pyviblib.gui.dialogs.VibLocalizationsSettingsDialog method)

update_masses() (pyviblib.molecule.Molecule method) update_menu() (pyviblib.gui.widgets.MoleculeThumbnailWidget method) update_table() (pyviblib.gui.widgets.CorrelationResultsTable method) update_thumbnails() (pyviblib.gui.main.Main method)

V

V_a2() (pyviblib.calc.spectra.RamanROATensors method) V_aG() (pyviblib.calc.spectra.RamanROATensors method) V_all() (pyviblib.calc.spectra.RamanROATensors static method) V_b2() (pyviblib.calc.spectra.RamanROATensors method) V_b2A() (pyviblib.calc.spectra.RamanROATensors method) V_b2G() (pyviblib.calc.spectra.RamanROATensors method) V_spacial_odc() (pyviblib.calc.spectra.RamanROATensors method) vcd_matrix() (pyviblib.calc.spectra.IRVCDTensors method) vib_amplitudes() (in module pyviblib.calc.vibrations) vibana() (in module pyviblib.calc.vibrations) VibLocalizationsFigure (class in pyviblib.gui.figures) VibLocalizationsSettingsDialog (class in pyviblib.gui.dialogs) VibLocalizationsWindow (class in pyviblib.gui.windows)

VibNavigationFrame (class in pyviblib.gui.widgets) vibno_to_ij() (pyviblib.gui.widgets.CorrelationResultsTable method) VibrationalToolbar (class in pyviblib.gui.widgets) VibrationalToolbarLight (class in pyviblib.gui.widgets) VibrationPairWindow (class in pyviblib.gui.windows) VOASimilarityCurvesFigure (class in pyviblib.gui.figures) VOASimilarityCurvesSettingsDialog (class in pyviblib.gui.dialogs) VOASimilarityCurvesWindow (class in pyviblib.gui.windows) VOAVIEWFileParser (class in pyviblib.io.parsers) VOAVIEWFileWriter (class in pyviblib.io.writers) voigt_norm() (in module pyviblib.calc.common)

W

WindowNavigationToolbar (class in pyviblib.gui.widgets) WizardWidget (class in pyviblib.gui.widgets) WorkspaceWindow (class in pyviblib.gui.windows) write() (pyviblib.io.writers.AbstractFileWriter method) (pyviblib.io.writers.FCHKFileWriter method) (pyviblib.io.writers.GaussianInputFileWriter method) (pyviblib.io.writers.HESFileWriter method) (pyviblib.io.writers.MOLDENFileWriter method) (pyviblib.io.writers.PyVib2MolFileWriter method) (pyviblib.io.writers.RamanROAExpSpectraFileWriter method) (pyviblib.io.writers.SpectraMixtureFileWriter method) (pyviblib.io.writers.VOAVIEWFileWriter method) (pyviblib.io.writers.XMolXYZFileWriter method)

WriteError

X

XMolXYZFileParser (class in pyviblib.io.parsers) XMolXYZFileWriter (class in pyviblib.io.writers)

Z

zoom() (pyviblib.gui.widgets.MoleculeRenderWidget method)